recipe bioconductor-scpdata

Single-Cell Proteomics Data Package

Homepage

https://bioconductor.org/packages/3.13/data/experiment/html/scpdata.html

License

GPL-2

Recipe

/bioconductor-scpdata/meta.yaml

The package disseminates mass spectrometry (MS)-based single-cell proteomics (SCP) datasets. The data were collected from published work and formatted using the `scp` data structure. The data sets contain quantitative information at spectrum, peptide and/or protein level for single cells or minute sample amounts.

package bioconductor-scpdata

Versions

1.0.0-0

Depends

• bioconductor-annotationhub >=3.0.0,<3.1.0

• bioconductor-experimenthub >=2.0.0,<2.1.0

• bioconductor-qfeatures >=1.2.0,<1.3.0

• bioconductor-s4vectors >=0.30.0,<0.31.0

• bioconductor-singlecellexperiment >=1.14.0,<1.15.0

• curl >=7.77.0,<8.0a0

• r-base >=4.1,<4.2.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-scpdata

and update with:

conda update bioconductor-scpdata

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-scpdata:<tag>

(see bioconductor-scpdata/tags for valid values for <tag>)

Download stats

Link to this page

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