-
recipe
bioconductor-screcover
scRecover for imputation of single-cell RNA-seq data
- Homepage
https://bioconductor.org/packages/3.12/bioc/html/scRecover.html
- License
GPL
- Recipe
scRecover is an R package for imputation of single-cell RNA-seq (scRNA-seq) data. It will detect and impute dropout values in a scRNA-seq raw read counts matrix while keeping the real zeros unchanged, since there are both dropout zeros and real zeros in scRNA-seq data. By combination with scImpute, SAVER and MAGIC, scRecover not only detects dropout and real zeros at higher accuracy, but also improve the downstream clustering and visualization results.
-
package
bioconductor-screcover
¶ -
- Versions
1.6.0-0
,1.4.0-0
,1.2.0-0
,1.0.0-1
,1.0.0-0
- Depends
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-screcover
and update with:
conda update bioconductor-screcover
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-screcover:<tag>
(see bioconductor-screcover/tags for valid values for
<tag>
)
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-screcover/README.html)