recipe bioconductor-scrnaseq

Collection of Public Single-Cell RNA-Seq Datasets

Homepage

https://bioconductor.org/packages/3.13/data/experiment/html/scRNAseq.html

License

CC0

Recipe

/bioconductor-scrnaseq/meta.yaml

Gene-level counts for a collection of public scRNA-seq datasets, provided as SingleCellExperiment objects with cell- and gene-level metadata.

package bioconductor-scrnaseq

Versions

2.6.1-0,  2.4.0-1,  2.4.0-0,  2.3.17-0,  2.2.0-0,  1.99.8-0,  1.10.0-1,  1.8.0-0,  1.6.0-0

Depends

• bioconductor-annotationdbi >=1.54.0,<1.55.0

• bioconductor-annotationhub >=3.0.0,<3.1.0

• bioconductor-biocgenerics >=0.38.0,<0.39.0

• bioconductor-ensembldb >=2.16.0,<2.17.0

• bioconductor-experimenthub >=2.0.0,<2.1.0

• bioconductor-genomicfeatures >=1.44.0,<1.45.0

• bioconductor-genomicranges >=1.44.0,<1.45.0

• bioconductor-s4vectors >=0.30.0,<0.31.0

• bioconductor-singlecellexperiment >=1.14.0,<1.15.0

• bioconductor-summarizedexperiment >=1.22.0,<1.23.0

• curl >=7.77.0,<8.0a0

• r-base >=4.1,<4.2.0a0

Required By

• bioconductor-singlecelltk

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-scrnaseq

and update with:

conda update bioconductor-scrnaseq

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-scrnaseq:<tag>

(see bioconductor-scrnaseq/tags for valid values for <tag>)

Download stats

Link to this page

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