- recipe bioconductor-scrnaseq
Collection of Public Single-Cell RNA-Seq Datasets
- Homepage:
https://bioconductor.org/packages/3.16/data/experiment/html/scRNAseq.html
- License:
CC0
- Recipe:
Gene-level counts for a collection of public scRNA-seq datasets, provided as SingleCellExperiment objects with cell- and gene-level metadata.
- package bioconductor-scrnaseq¶
-
- Versions:
2.12.0-0
,2.8.0-1
,2.8.0-0
,2.6.1-0
,2.4.0-1
,2.4.0-0
,2.3.17-0
,2.2.0-0
,1.99.8-0
,2.12.0-0
,2.8.0-1
,2.8.0-0
,2.6.1-0
,2.4.0-1
,2.4.0-0
,2.3.17-0
,2.2.0-0
,1.99.8-0
,1.10.0-1
,1.8.0-0
,1.6.0-0
- Depends:
bioconductor-annotationdbi
>=1.60.0,<1.61.0
bioconductor-annotationhub
>=3.6.0,<3.7.0
bioconductor-biocgenerics
>=0.44.0,<0.45.0
bioconductor-data-packages
>=20221109
bioconductor-ensembldb
>=2.22.0,<2.23.0
bioconductor-experimenthub
>=2.6.0,<2.7.0
bioconductor-genomicfeatures
>=1.50.0,<1.51.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
bioconductor-singlecellexperiment
>=1.20.0,<1.21.0
bioconductor-summarizedexperiment
>=1.28.0,<1.29.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-scrnaseq
and update with:
conda update bioconductor-scrnaseq
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-scrnaseq:<tag>
(see bioconductor-scrnaseq/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-scrnaseq/README.html)