recipe bioconductor-scrnaseq

Collection of Public Single-Cell RNA-Seq Datasets

Homepage:

https://bioconductor.org/packages/3.14/data/experiment/html/scRNAseq.html

License:

CC0

Recipe:

/bioconductor-scrnaseq/meta.yaml

Gene-level counts for a collection of public scRNA-seq datasets, provided as SingleCellExperiment objects with cell- and gene-level metadata.

package bioconductor-scrnaseq

Versions:

2.8.0-0,  2.6.1-0,  2.4.0-1,  2.4.0-0,  2.3.17-0,  2.2.0-0,  1.99.8-0,  1.10.0-1,  1.8.0-0, 

2.8.0-0,  2.6.1-0,  2.4.0-1,  2.4.0-0,  2.3.17-0,  2.2.0-0,  1.99.8-0,  1.10.0-1,  1.8.0-0,  1.6.0-0

Depends:

• bioconductor-annotationdbi >=1.56.0,<1.57.0

• bioconductor-annotationhub >=3.2.0,<3.3.0

• bioconductor-biocgenerics >=0.40.0,<0.41.0

• bioconductor-ensembldb >=2.18.0,<2.19.0

• bioconductor-experimenthub >=2.2.0,<2.3.0

• bioconductor-genomicfeatures >=1.46.0,<1.47.0

• bioconductor-genomicranges >=1.46.0,<1.47.0

• bioconductor-s4vectors >=0.32.0,<0.33.0

• bioconductor-singlecellexperiment >=1.16.0,<1.17.0

• bioconductor-summarizedexperiment >=1.24.0,<1.25.0

• curl >=7.79.1,<8.0a0

• r-base >=4.1,<4.2.0a0

Required By:

• bioconductor-singlecelltk

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-scrnaseq

and update with:

conda update bioconductor-scrnaseq

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-scrnaseq:<tag>

(see bioconductor-scrnaseq/tags for valid values for <tag>)

Download stats

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