recipe bioconductor-scrnaseq

Collection of Public Single-Cell RNA-Seq Datasets

Homepage

https://bioconductor.org/packages/3.11/data/experiment/html/scRNAseq.html

License

CC0

Recipe

/bioconductor-scrnaseq/meta.yaml

Gene-level counts for a collection of public scRNA-seq datasets, provided as SingleCellExperiment objects with cell- and gene-level metadata.

package bioconductor-scrnaseq

Versions

2.2.0-0, 1.99.8-0, 1.10.0-1, 1.8.0-0, 1.6.0-0

Depends

• bioconductor-biocgenerics >=0.34.0,<0.35.0

• bioconductor-experimenthub >=1.14.0,<1.15.0

• bioconductor-genomicranges >=1.40.0,<1.41.0

• bioconductor-s4vectors >=0.26.0,<0.27.0

• bioconductor-singlecellexperiment >=1.10.0,<1.11.0

• bioconductor-summarizedexperiment >=1.18.0,<1.19.0

• curl >=7.69.1,<8.0a0

• r-base >=4.0,<4.1.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-scrnaseq

and update with:

conda update bioconductor-scrnaseq

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-scrnaseq:<tag>

(see bioconductor-scrnaseq/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-scrnaseq/README.html)