recipe bioconductor-segmentseq

Methods for identifying small RNA loci from high-throughput sequencing data

Homepage

https://bioconductor.org/packages/3.10/bioc/html/segmentSeq.html

License

GPL-3

Recipe

/bioconductor-segmentseq/meta.yaml

Links

biotools: segmentseq, doi: 10.1093/bioinformatics/btr687

High-throughput sequencing technologies allow the production of large volumes of short sequences, which can be aligned to the genome to create a set of matches to the genome. By looking for regions of the genome which to which there are high densities of matches, we can infer a segmentation of the genome into regions of biological significance. The methods in this package allow the simultaneous segmentation of data from multiple samples, taking into account replicate data, in order to create a consensus segmentation. This has obvious applications in a number of classes of sequencing experiments, particularly in the discovery of small RNA loci and novel mRNA transcriptome discovery.

package bioconductor-segmentseq

(downloads) docker_bioconductor-segmentseq

Versions

2.20.0-0, 2.18.0-1, 2.16.0-0, 2.14.0-0, 2.12.0-0, 2.10.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-segmentseq

and update with:

conda update bioconductor-segmentseq

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-segmentseq:<tag>

(see bioconductor-segmentseq/tags for valid values for <tag>)