recipe bioconductor-sepira

Systems EPigenomics Inference of Regulatory Activity

Homepage:

https://bioconductor.org/packages/3.17/bioc/html/SEPIRA.html

License:

GPL-3

Recipe:

/bioconductor-sepira/meta.yaml

SEPIRA (Systems EPigenomics Inference of Regulatory Activity) is an algorithm that infers sample-specific transcription factor activity from the genome-wide expression or DNA methylation profile of the sample.

package bioconductor-sepira

(downloads) docker_bioconductor-sepira

versions:
1.20.0-0,  1.18.0-0,  1.14.0-0,  1.12.0-0,  1.10.0-1,  1.10.0-0,  1.8.0-0,  1.6.0-0,  1.4.1-0, 

1.20.0-0,  1.18.0-0,  1.14.0-0,  1.12.0-0,  1.10.0-1,  1.10.0-0,  1.8.0-0,  1.6.0-0,  1.4.1-0,  1.4.0-0,  1.2.0-0

depends bioconductor-limma:

>=3.56.0,<3.57.0

depends r-base:

>=4.3,<4.4.0a0

depends r-corpcor:

>=1.6.9

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-sepira

and update with::

   mamba update bioconductor-sepira

To create a new environment, run:

mamba create --name myenvname bioconductor-sepira

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-sepira:<tag>

(see `bioconductor-sepira/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-sepira/README.html)