recipe bioconductor-seqcna.annot

Annotation for the copy number analysis of deep sequencing cancer data with seqCNA

Homepage:

https://bioconductor.org/packages/3.16/data/experiment/html/seqCNA.annot.html

License:

GPL-3

Recipe:

/bioconductor-seqcna.annot/meta.yaml

Provides annotation on GC content, mappability and genomic features for various genomes

package bioconductor-seqcna.annot

Versions:

1.34.0-0,  1.33.0-0,  1.30.0-1,  1.30.0-0,  1.28.0-0,  1.26.0-1,  1.26.0-0,  1.24.0-0,  1.22.0-0, 

1.34.0-0,  1.33.0-0,  1.30.0-1,  1.30.0-0,  1.28.0-0,  1.26.0-1,  1.26.0-0,  1.24.0-0,  1.22.0-0,  1.20.0-2,  1.20.0-1,  1.18.0-0

Depends:

• bioconductor-data-packages >=20221106

• curl

• r-base >=4.2,<4.3.0a0

Required By:

• bioconductor-seqcna

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-seqcna.annot

and update with:

conda update bioconductor-seqcna.annot

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-seqcna.annot:<tag>

(see bioconductor-seqcna.annot/tags for valid values for <tag>)

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