bioconductor-seqgsea

downloads

The package generally provides methods for gene set enrichment analysis of high-throughput RNA-Seq data by integrating differential expression and splicing. It uses negative binomial distribution to model read count data, which accounts for sequencing biases and biological variation. Based on permutation tests, statistical significance can also be achieved regarding each gene’s differential expression and splicing, respectively.

Home http://bioconductor.org/packages/3.6/bioc/html/SeqGSEA.html
Versions 1.16.0, 1.18.0
License GPL (>= 3)
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-seqgsea

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-seqgsea

and update with:

conda update bioconductor-seqgsea

docker

A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-seqgsea.