Package Recipe 'bioconductor-seqlogo'

recipe bioconductor-seqlogo

Sequence logos for DNA sequence alignments

Homepage:: https://bioconductor.org/packages/3.20/bioc/html/seqLogo.html
License:: LGPL (>= 2)
Recipe:: /bioconductor-seqlogo/meta.yaml
Links:: biotools: seqlogo, doi: 10.1038/nmeth.3252

seqLogo takes the position weight matrix of a DNA sequence motif and plots the corresponding sequence logo as introduced by Schneider and Stephens (1990).

package bioconductor-seqlogo¶

versions:

1.72.0-0, 1.68.0-0, 1.66.0-0, 1.64.0-0, 1.60.0-0, 1.58.0-0, 1.56.0-1, 1.56.0-0, 1.54.1-0,
1.72.0-0, 1.68.0-0, 1.66.0-0, 1.64.0-0, 1.60.0-0, 1.58.0-0, 1.56.0-1, 1.56.0-0, 1.54.1-0, 1.52.0-0, 1.50.0-1, 1.50.0-0, 1.48.0-0, 1.46.0-0, 1.44.0-0, 1.42.0-0, 1.38.0-0, 1.36.0-0

depends r-base:

>=4.4,<4.5.0a0

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-seqlogo

and update with::

   mamba update bioconductor-seqlogo

To create a new environment, run:

mamba create --name myenvname bioconductor-seqlogo

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-seqlogo:<tag>

(see `bioconductor-seqlogo/tags`_ for valid values for ``<tag>``)

Download stats¶

Link to this page¶

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-seqlogo/README.html)