recipe bioconductor-seqlogo

Sequence logos for DNA sequence alignments

Homepage

https://bioconductor.org/packages/3.14/bioc/html/seqLogo.html

License

LGPL (>= 2)

Recipe

/bioconductor-seqlogo/meta.yaml

Links

biotools: seqlogo, doi: 10.1038/nmeth.3252

seqLogo takes the position weight matrix of a DNA sequence motif and plots the corresponding sequence logo as introduced by Schneider and Stephens (1990).

package bioconductor-seqlogo

Versions

1.60.0-0,  1.58.0-0,  1.56.0-1,  1.56.0-0,  1.54.1-0,  1.52.0-0,  1.50.0-1,  1.50.0-0,  1.48.0-0, 

1.60.0-0,  1.58.0-0,  1.56.0-1,  1.56.0-0,  1.54.1-0,  1.52.0-0,  1.50.0-1,  1.50.0-0,  1.48.0-0,  1.46.0-0,  1.44.0-0,  1.42.0-0,  1.38.0-0,  1.36.0-0

Depends

• r-base >=4.1,<4.2.0a0

Required By

• bioconductor-rgadem

• bioconductor-tfbstools

• bioconductor-interest

• bioconductor-scanmir

• dammit

• transdecoder

• bioconductor-riboseqr

• bioconductor-splinter

• bioconductor-igvr

• bioconductor-pwmenrich

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-seqlogo

and update with:

conda update bioconductor-seqlogo

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-seqlogo:<tag>

(see bioconductor-seqlogo/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-seqlogo/README.html)