recipe bioconductor-seqvartools

Tools for variant data

Homepage

https://bioconductor.org/packages/3.10/bioc/html/SeqVarTools.html

License

GPL-3

Recipe

/bioconductor-seqvartools/meta.yaml

An interface to the fast-access storage format for VCF data provided in SeqArray, with tools for common operations and analysis.

package bioconductor-seqvartools

Versions

1.24.0-0, 1.22.0-1, 1.20.0-0

Depends

• bioconductor-biobase >=2.46.0,<2.47.0

• bioconductor-gdsfmt >=1.22.0,<1.23.0

• bioconductor-genomicranges >=1.38.0,<1.39.0

• bioconductor-iranges >=2.20.0,<2.21.0

• bioconductor-s4vectors >=0.24.0,<0.25.0

• bioconductor-seqarray >=1.26.0,<1.27.0

• r-base >=3.6,<3.7.0a0

• r-dplyr

• r-gwasexacthw

• r-logistf

• r-matrix

• r-rlang

• r-tidyr

Required By

• bioconductor-genesis

• bioconductor-variantexperiment

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-seqvartools

and update with:

conda update bioconductor-seqvartools

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-seqvartools:<tag>

(see bioconductor-seqvartools/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-seqvartools/README.html)