recipe bioconductor-seqvartools

Tools for variant data

Homepage

https://bioconductor.org/packages/3.14/bioc/html/SeqVarTools.html

License

GPL-3

Recipe

/bioconductor-seqvartools/meta.yaml

An interface to the fast-access storage format for VCF data provided in SeqArray, with tools for common operations and analysis.

package bioconductor-seqvartools

Versions

1.32.0-0,  1.30.0-0,  1.28.1-0,  1.28.0-0,  1.26.0-0,  1.24.0-0,  1.22.0-1,  1.20.0-0

Depends

• bioconductor-biobase >=2.54.0,<2.55.0

• bioconductor-biocgenerics >=0.40.0,<0.41.0

• bioconductor-gdsfmt >=1.30.0,<1.31.0

• bioconductor-genomicranges >=1.46.0,<1.47.0

• bioconductor-iranges >=2.28.0,<2.29.0

• bioconductor-s4vectors >=0.32.0,<0.33.0

• bioconductor-seqarray >=1.34.0,<1.35.0

• r-base >=4.1,<4.2.0a0

• r-data.table

• r-gwasexacthw

• r-logistf

• r-matrix

Required By

• bioconductor-variantexperiment

• bioconductor-genesis

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-seqvartools

and update with:

conda update bioconductor-seqvartools

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-seqvartools:<tag>

(see bioconductor-seqvartools/tags for valid values for <tag>)

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