- recipe bioconductor-seqvartools
Tools for variant data
- Homepage
https://bioconductor.org/packages/3.14/bioc/html/SeqVarTools.html
- License
GPL-3
- Recipe
An interface to the fast-access storage format for VCF data provided in SeqArray, with tools for common operations and analysis.
- package bioconductor-seqvartools¶
-
- Versions
1.32.0-0
,1.30.0-0
,1.28.1-0
,1.28.0-0
,1.26.0-0
,1.24.0-0
,1.22.0-1
,1.20.0-0
- Depends
bioconductor-biobase
>=2.54.0,<2.55.0
bioconductor-biocgenerics
>=0.40.0,<0.41.0
bioconductor-gdsfmt
>=1.30.0,<1.31.0
bioconductor-genomicranges
>=1.46.0,<1.47.0
bioconductor-iranges
>=2.28.0,<2.29.0
bioconductor-s4vectors
>=0.32.0,<0.33.0
bioconductor-seqarray
>=1.34.0,<1.35.0
r-base
>=4.1,<4.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-seqvartools
and update with:
conda update bioconductor-seqvartools
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-seqvartools:<tag>
(see bioconductor-seqvartools/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-seqvartools/README.html)