recipe bioconductor-sesame

SEnsible Step-wise Analysis of DNA MEthylation BeadChips

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/sesame.html

License:

MIT + file LICENSE

Recipe:

/bioconductor-sesame/meta.yaml

Tools For analyzing Illumina Infinium DNA methylation arrays.SeSAMe provides utilities to support analyses of multiple generations of Infinium DNA methylation BeadChips, including preprocessing, quality control, visualization and inference. SeSAMe features accurate detection calling, intelligent inference of ethnicity, sex and advanced quality control routines.

package bioconductor-sesame

Versions:

1.16.0-0,  1.12.0-0,  1.10.3-0,  1.8.2-0,  1.8.0-0,  1.6.0-0,  1.4.0-1,  1.2.0-1,  1.0.0-0

Depends:

• bioconductor-biocfilecache >=2.6.0,<2.7.0

• bioconductor-biocparallel >=1.32.0,<1.33.0

• bioconductor-genomeinfodb >=1.34.0,<1.35.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-illuminaio >=0.40.0,<0.41.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-preprocesscore >=1.60.0,<1.61.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• bioconductor-sesamedata >=1.16.0,<1.17.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• r-base >=4.2,<4.3.0a0

• r-dplyr

• r-ggplot2

• r-mass

• r-readr

• r-reshape2

• r-stringr

• r-tibble

• r-wheatmap >=0.2.0

Required By:

• bioconductor-methreg

• bioconductor-tcgabiolinksgui

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-sesame

and update with:

conda update bioconductor-sesame

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-sesame:<tag>

(see bioconductor-sesame/tags for valid values for <tag>)

Download stats

Link to this page

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