recipe bioconductor-sesamedata

Supporting Data for SeSAMe Package

Homepage:

https://bioconductor.org/packages/3.16/data/experiment/html/sesameData.html

License:

Artistic-2.0

Recipe:

/bioconductor-sesamedata/meta.yaml

Provides supporting annotation and test data for SeSAMe package. This includes chip tango addresses, mapping information, performance annotation, and trained predictor for Infinium array data. This package provides user access to essential annotation data for working with many generations of the Infinium DNA methylation array. Current we support human array (HM27, HM450, EPIC), mouse array (MM285) and the HorvathMethylChip40 (Mammal40) array.

package bioconductor-sesamedata

Versions:

1.16.0-0,  1.12.0-1,  1.12.0-0,  1.10.0-0,  1.8.1-0,  1.8.0-0,  1.6.0-0,  1.4.0-0,  1.2.0-1, 

1.16.0-0,  1.12.0-1,  1.12.0-0,  1.10.0-0,  1.8.1-0,  1.8.0-0,  1.6.0-0,  1.4.0-0,  1.2.0-1,  1.0.0-1,  1.0.0-0

Depends:

• bioconductor-annotationhub >=3.6.0,<3.7.0

• bioconductor-data-packages >=20221108

• bioconductor-experimenthub >=2.6.0,<2.7.0

• bioconductor-genomeinfodb >=1.34.0,<1.35.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• curl

• r-base >=4.2,<4.3.0a0

• r-readr

• r-stringr

Required By:

• bioconductor-sesame

• bioconductor-methreg

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-sesamedata

and update with:

conda update bioconductor-sesamedata

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-sesamedata:<tag>

(see bioconductor-sesamedata/tags for valid values for <tag>)

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