recipe bioconductor-sevenbridges

Seven Bridges Platform API Client and Common Workflow Language Tool Builder in R

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/sevenbridges.html

License:

Apache License 2.0 | file LICENSE

Recipe:

/bioconductor-sevenbridges/meta.yaml

R client and utilities for Seven Bridges platform API, from Cancer Genomics Cloud to other Seven Bridges supported platforms.

package bioconductor-sevenbridges

(downloads) docker_bioconductor-sevenbridges

versions:
1.32.0-0,  1.30.0-0,  1.28.0-0,  1.24.0-0,  1.22.0-0,  1.20.1-0,  1.20.0-0,  1.18.0-0,  1.16.0-0, 

1.32.0-0,  1.30.0-0,  1.28.0-0,  1.24.0-0,  1.22.0-0,  1.20.1-0,  1.20.0-0,  1.18.0-0,  1.16.0-0,  1.14.1-0,  1.12.5-0,  1.12.3-0

depends bioconductor-s4vectors:

>=0.40.0,<0.41.0

depends r-base:

>=4.3,<4.4.0a0

depends r-curl:

depends r-data.table:

depends r-docopt:

depends r-httr:

depends r-jsonlite:

depends r-objectproperties:

depends r-stringr:

depends r-uuid:

depends r-yaml:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-sevenbridges

and update with::

   mamba update bioconductor-sevenbridges

To create a new environment, run:

mamba create --name myenvname bioconductor-sevenbridges

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-sevenbridges:<tag>

(see `bioconductor-sevenbridges/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-sevenbridges/README.html)