recipe bioconductor-sfedata

Example SpatialFeatureExperiment datasets

Homepage:

https://bioconductor.org/packages/3.16/data/experiment/html/SFEData.html

License:

Artistic-2.0

Recipe:

/bioconductor-sfedata/meta.yaml

Example spatial transcriptomics datasets with Simple Feature annotations as SpatialFeatureExperiment objects. Technologies include Visium, slide-seq, Nanostring CoxMX, Vizgen MERFISH, and 10X Xenium. Tissues include mouse skeletal muscle, human melanoma metastasis, human lung, breast cancer, and mouse liver.

package bioconductor-sfedata

Versions:

1.0.2-0

Depends:

• bioconductor-annotationhub >=3.6.0,<3.7.0

• bioconductor-biocfilecache >=2.6.0,<2.7.0

• bioconductor-data-packages >=20221108

• bioconductor-experimenthub >=2.6.0,<2.7.0

• curl

• r-base >=4.2,<4.3.0a0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-sfedata

and update with:

conda update bioconductor-sfedata

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-sfedata:<tag>

(see bioconductor-sfedata/tags for valid values for <tag>)

Download stats

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