recipe bioconductor-shinymethyldata

Example dataset of input data for shinyMethyl

Homepage

https://bioconductor.org/packages/3.11/data/experiment/html/shinyMethylData.html

License

Artistic-2.0

Recipe

/bioconductor-shinymethyldata/meta.yaml

Extracted data from 369 TCGA Head and Neck Cancer DNA methylation samples. The extracted data serve as an example dataset for the package shinyMethyl. Original samples are from 450k methylation arrays, and were obtained from The Cancer Genome Atlas (TCGA). 310 samples are from tumor, 50 are matched normals and 9 are technical replicates of a control cell line.

package bioconductor-shinymethyldata

(downloads) docker_bioconductor-shinymethyldata

Versions

1.8.0-0, 1.6.0-0, 1.4.0-1, 1.4.0-0, 1.2.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-shinymethyldata

and update with:

conda update bioconductor-shinymethyldata

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-shinymethyldata:<tag>

(see bioconductor-shinymethyldata/tags for valid values for <tag>)