recipe bioconductor-shortread

FASTQ input and manipulation

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/ShortRead.html

License:

Artistic-2.0

Recipe:

/bioconductor-shortread/meta.yaml

Links:

biotools: shortread

This package implements sampling, iteration, and input of FASTQ files. The package includes functions for filtering and trimming reads, and for generating a quality assessment report. Data are represented as DNAStringSet-derived objects, and easily manipulated for a diversity of purposes. The package also contains legacy support for early single-end, ungapped alignment formats.

package bioconductor-shortread

(downloads) docker_bioconductor-shortread

Versions:
1.56.0-11.56.0-01.52.0-21.52.0-11.52.0-01.50.0-01.48.0-11.48.0-01.46.0-0

1.56.0-11.56.0-01.52.0-21.52.0-11.52.0-01.50.0-01.48.0-11.48.0-01.46.0-01.44.0-01.42.0-11.40.0-01.38.0-01.36.0-01.34.2-01.32.0-01.28.0-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-shortread

and update with:

conda update bioconductor-shortread

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-shortread:<tag>

(see bioconductor-shortread/tags for valid values for <tag>)

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