recipe bioconductor-shortread

FASTQ input and manipulation

Homepage

https://bioconductor.org/packages/3.10/bioc/html/ShortRead.html

License

Artistic-2.0

Recipe

/bioconductor-shortread/meta.yaml

Links

biotools: shortread

This package implements sampling, iteration, and input of FASTQ files. The package includes functions for filtering and trimming reads, and for generating a quality assessment report. Data are represented as DNAStringSet-derived objects, and easily manipulated for a diversity of purposes. The package also contains legacy support for early single-end, ungapped alignment formats.

package bioconductor-shortread

(downloads) docker_bioconductor-shortread

Versions

1.44.0-0, 1.42.0-1, 1.40.0-0, 1.38.0-0, 1.36.0-0, 1.34.2-0, 1.32.0-0, 1.28.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-shortread

and update with:

conda update bioconductor-shortread

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-shortread:<tag>

(see bioconductor-shortread/tags for valid values for <tag>)