recipe bioconductor-sictools

This package is to find SNV/Indel differences between two bam files with near relationship in a way of pairwise comparison thourgh each base position across the genome region of interest. The difference is inferred by fisher test and euclidean distance, the input of which is the base count (A,T,G,C) in a given position and read counts for indels that span no less than 2bp on both sides of indel region.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/SICtools.html

License

GPL (>=2)

Recipe

/bioconductor-sictools/meta.yaml

package bioconductor-sictools

(downloads) docker_bioconductor-sictools

Versions

1.12.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-sictools

and update with:

conda update bioconductor-sictools

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-sictools:<tag>

(see bioconductor-sictools/tags for valid values for <tag>)