recipe bioconductor-sights

Statistics and dIagnostic Graphs for HTS

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/sights.html

License:

GPL-3 | file LICENSE

Recipe:

/bioconductor-sights/meta.yaml

Links:

biotools: sights, doi: 10.1177/1087057114548853

SIGHTS is a suite of normalization methods, statistical tests, and diagnostic graphical tools for high throughput screening (HTS) assays. HTS assays use microtitre plates to screen large libraries of compounds for their biological, chemical, or biochemical activity.

package bioconductor-sights

(downloads) docker_bioconductor-sights

versions:
1.28.0-0,  1.26.0-0,  1.24.0-0,  1.20.0-0,  1.18.0-0,  1.16.0-1,  1.16.0-0,  1.14.0-0,  1.12.0-0, 

1.28.0-0,  1.26.0-0,  1.24.0-0,  1.20.0-0,  1.18.0-0,  1.16.0-1,  1.16.0-0,  1.14.0-0,  1.12.0-0,  1.10.0-1,  1.10.0-0,  1.8.1-0,  1.8.0-0,  1.6.0-0,  1.4.0-0,  1.2.0-0

depends bioconductor-qvalue:

>=2.34.0,<2.35.0

depends r-base:

>=4.3,<4.4.0a0

depends r-ggplot2:

>=2.0

depends r-lattice:

>=0.2

depends r-mass:

>=7.3

depends r-reshape2:

>=1.4

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-sights

and update with::

   mamba update bioconductor-sights

To create a new environment, run:

mamba create --name myenvname bioconductor-sights

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-sights:<tag>

(see `bioconductor-sights/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-sights/README.html)