bioconductor-signer

downloads

The signeR package provides an empirical Bayesian approach to mutational signature discovery. It is designed to analyze single nucleotide variaton (SNV) counts in cancer genomes, but can also be applied to other features as well. Functionalities to characterize signatures or genome samples according to exposure patterns are also provided.

Home http://bioconductor.org/packages/3.6/bioc/html/signeR.html
Versions 1.0.1, 1.2.2, 1.4.0
License GPL-3
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-signer

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-signer

and update with:

conda update bioconductor-signer

docker

A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-signer.