- recipe bioconductor-simpintlists
The package contains BioGRID interactions for various organisms in a simple format
- Homepage:
https://bioconductor.org/packages/3.16/data/experiment/html/simpIntLists.html
- License:
GPL (>= 2)
- Recipe:
The package contains BioGRID interactions for arabidopsis(thale cress), c.elegans, fruit fly, human, mouse, yeast( budding yeast ) and S.pombe (fission yeast) . Entrez ids, official names and unique ids can be used to find proteins. The format of interactions are lists. For each gene/protein, there is an entry in the list with "name" containing name of the gene/protein and "interactors" containing the list of genes/proteins interacting with it.
- package bioconductor-simpintlists¶
-
- Versions:
1.33.0-0
,1.30.0-1
,1.30.0-0
,1.28.0-0
,1.26.0-2
,1.26.0-1
,1.26.0-0
,1.25.0-0
,1.24.0-0
,1.33.0-0
,1.30.0-1
,1.30.0-0
,1.28.0-0
,1.26.0-2
,1.26.0-1
,1.26.0-0
,1.25.0-0
,1.24.0-0
,1.22.0-0
,1.20.0-1
,1.20.0-0
,1.18.0-0
,1.16.0-0
,1.14.0-0
- Depends:
bioconductor-data-packages
>=20221103
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-simpintlists
and update with:
conda update bioconductor-simpintlists
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-simpintlists:<tag>
(see bioconductor-simpintlists/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-simpintlists/README.html)