bioconductor-simpintlists

downloads

The package contains BioGRID interactions for arabidopsis(thale cress), c.elegans, fruit fly, human, mouse, yeast( budding yeast ) and S.pombe (fission yeast) . Entrez ids, official names and unique ids can be used to find proteins. The format of interactions are lists. For each gene/protein, there is an entry in the list with “name” containing name of the gene/protein and “interactors” containing the list of genes/proteins interacting with it.

Home http://bioconductor.org/packages/3.7/data/experiment/html/simpIntLists.html
Versions 1.16.0, 1.14.0
License GPL (>= 2)
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-simpintlists

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-simpintlists

and update with:

conda update bioconductor-simpintlists

docker

A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-simpintlists.