recipe bioconductor-simpintlists

The package contains BioGRID interactions for various organisms in a simple format

Homepage:

https://bioconductor.org/packages/3.16/data/experiment/html/simpIntLists.html

License:

GPL (>= 2)

Recipe:

/bioconductor-simpintlists/meta.yaml

The package contains BioGRID interactions for arabidopsis(thale cress), c.elegans, fruit fly, human, mouse, yeast( budding yeast ) and S.pombe (fission yeast) . Entrez ids, official names and unique ids can be used to find proteins. The format of interactions are lists. For each gene/protein, there is an entry in the list with "name" containing name of the gene/protein and "interactors" containing the list of genes/proteins interacting with it.

package bioconductor-simpintlists

(downloads) docker_bioconductor-simpintlists

Versions:
1.33.0-0,  1.30.0-1,  1.30.0-0,  1.28.0-0,  1.26.0-2,  1.26.0-1,  1.26.0-0,  1.25.0-0,  1.24.0-0, 

1.33.0-0,  1.30.0-1,  1.30.0-0,  1.28.0-0,  1.26.0-2,  1.26.0-1,  1.26.0-0,  1.25.0-0,  1.24.0-0,  1.22.0-0,  1.20.0-1,  1.20.0-0,  1.18.0-0,  1.16.0-0,  1.14.0-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-simpintlists

and update with:

conda update bioconductor-simpintlists

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-simpintlists:<tag>

(see bioconductor-simpintlists/tags for valid values for <tag>)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-simpintlists/README.html)