recipe bioconductor-simpintlists

The package contains BioGRID interactions for arabidopsis(thale cress), c.elegans, fruit fly, human, mouse, yeast( budding yeast ) and S.pombe (fission yeast) . Entrez ids, official names and unique ids can be used to find proteins. The format of interactions are lists. For each gene/protein, there is an entry in the list with “name” containing name of the gene/protein and “interactors” containing the list of genes/proteins interacting with it.

Homepage

https://bioconductor.org/packages/3.9/data/experiment/html/simpIntLists.html

License

GPL (>= 2)

Recipe

/bioconductor-simpintlists/meta.yaml

package bioconductor-simpintlists

(downloads) docker_bioconductor-simpintlists

Versions

1.20.0-0, 1.18.0-0, 1.16.0-0, 1.14.0-0

Depends curl

>=7.64.1,<8.0a0

Depends r-base

>=3.5.1,<3.5.2.0a0

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-simpintlists

and update with:

conda update bioconductor-simpintlists

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-simpintlists:<tag>

(see bioconductor-simpintlists/tags for valid values for <tag>)