recipe bioconductor-simpintlists

The package contains BioGRID interactions for various organisms in a simple format

Homepage:

https://bioconductor.org/packages/3.16/data/experiment/html/simpIntLists.html

License:

GPL (>= 2)

Recipe:

/bioconductor-simpintlists/meta.yaml

The package contains BioGRID interactions for arabidopsis(thale cress), c.elegans, fruit fly, human, mouse, yeast( budding yeast ) and S.pombe (fission yeast) . Entrez ids, official names and unique ids can be used to find proteins. The format of interactions are lists. For each gene/protein, there is an entry in the list with "name" containing name of the gene/protein and "interactors" containing the list of genes/proteins interacting with it.

package bioconductor-simpintlists

(downloads) docker_bioconductor-simpintlists

Versions:
1.33.0-01.30.0-11.30.0-01.28.0-01.26.0-21.26.0-11.26.0-01.25.0-01.24.0-0

1.33.0-01.30.0-11.30.0-01.28.0-01.26.0-21.26.0-11.26.0-01.25.0-01.24.0-01.22.0-01.20.0-11.20.0-01.18.0-01.16.0-01.14.0-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-simpintlists

and update with:

conda update bioconductor-simpintlists

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-simpintlists:<tag>

(see bioconductor-simpintlists/tags for valid values for <tag>)

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