recipe bioconductor-singlecellexperiment-scripts

A set of wrappers for operations associated with the SingleCellExperiment package. Functions in R packages are hard to call when building workflows outside of R, so this package adds a set of simple wrappers with robust argument parsing. Intermediate steps are currently mainly serialized R objects, but the ultimate objective is to have language-agnostic intermediate formats allowing composite workflows using a variety of software packages.

Homepage

https://github.com/ebi-gene-expression-group/bioconductor-singlecellexperiment-scripts

License

GPL / GPL-3

Recipe

/bioconductor-singlecellexperiment-scripts/meta.yaml

package bioconductor-singlecellexperiment-scripts

(downloads) docker_bioconductor-singlecellexperiment-scripts

Versions

0.0.3-0, 0.0.2-0, 0.0.1-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-singlecellexperiment-scripts

and update with:

conda update bioconductor-singlecellexperiment-scripts

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-singlecellexperiment-scripts:<tag>

(see bioconductor-singlecellexperiment-scripts/tags for valid values for <tag>)