recipe bioconductor-singlecellmultimodal

Integrating Multi-modal Single Cell Experiment datasets

Homepage:

https://bioconductor.org/packages/3.16/data/experiment/html/SingleCellMultiModal.html

License:

Artistic-2.0

Recipe:

/bioconductor-singlecellmultimodal/meta.yaml

SingleCellMultiModal is an ExperimentHub package that serves multiple datasets obtained from GEO and other sources and represents them as MultiAssayExperiment objects. We provide several multi-modal datasets including scNMT, 10X Multiome, seqFISH, CITEseq, SCoPE2, and others. The scope of the package is is to provide data for benchmarking and analysis.

package bioconductor-singlecellmultimodal

Versions:

1.10.0-0,  1.6.0-1,  1.6.0-0,  1.4.1-0,  1.2.4-0,  1.1.19-0,  1.0.0-0

Depends:

• bioconductor-annotationhub >=3.6.0,<3.7.0

• bioconductor-biocfilecache >=2.6.0,<2.7.0

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• bioconductor-data-packages >=20221108

• bioconductor-experimenthub >=2.6.0,<2.7.0

• bioconductor-hdf5array >=1.26.0,<1.27.0

• bioconductor-multiassayexperiment >=1.24.0,<1.25.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• bioconductor-singlecellexperiment >=1.20.0,<1.21.0

• bioconductor-spatialexperiment >=1.8.0,<1.9.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• curl

• r-base >=4.2,<4.3.0a0

• r-matrix

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-singlecellmultimodal

and update with:

conda update bioconductor-singlecellmultimodal

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-singlecellmultimodal:<tag>

(see bioconductor-singlecellmultimodal/tags for valid values for <tag>)

Download stats

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