recipe bioconductor-singlecellsignalr

Cell Signalling Using Single Cell RNAseq Data Analysis

Homepage

https://bioconductor.org/packages/3.13/bioc/html/SingleCellSignalR.html

License

GPL-3

Recipe

/bioconductor-singlecellsignalr/meta.yaml

Allows single cell RNA seq data analysis, clustering, creates internal network and infers cell-cell interactions.

package bioconductor-singlecellsignalr

Versions

1.4.0-0,  1.2.0-1,  1.2.0-0,  1.0.0-0

Depends

• bioconductor-edger >=3.34.0,<3.35.0

• bioconductor-limma >=3.48.0,<3.49.0

• bioconductor-multtest >=2.48.0,<2.49.0

• bioconductor-scran >=1.20.0,<1.21.0

• bioconductor-simlr >=1.18.0,<1.19.0

• r-base >=4.1,<4.2.0a0

• r-biocmanager

• r-circlize

• r-data.table

• r-foreach

• r-gplots

• r-igraph

• r-pheatmap

• r-rtsne

• r-stringr

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-singlecellsignalr

and update with:

conda update bioconductor-singlecellsignalr

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-singlecellsignalr:<tag>

(see bioconductor-singlecellsignalr/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-singlecellsignalr/README.html)