recipe bioconductor-singlecellsignalr

Cell Signalling Using Single Cell RNAseq Data Analysis

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/SingleCellSignalR.html

License:

GPL-3

Recipe:

/bioconductor-singlecellsignalr/meta.yaml

Allows single cell RNA seq data analysis, clustering, creates internal network and infers cell-cell interactions.

package bioconductor-singlecellsignalr

Versions:

1.10.0-0,  1.6.0-0,  1.4.0-0,  1.2.0-1,  1.2.0-0,  1.0.0-0

Depends:

• bioconductor-edger >=3.40.0,<3.41.0

• bioconductor-limma >=3.54.0,<3.55.0

• bioconductor-multtest >=2.54.0,<2.55.0

• bioconductor-scran >=1.26.0,<1.27.0

• bioconductor-simlr >=1.24.0,<1.25.0

• r-base >=4.2,<4.3.0a0

• r-biocmanager

• r-circlize

• r-data.table

• r-foreach

• r-gplots

• r-igraph

• r-pheatmap

• r-rtsne

• r-stringr

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-singlecellsignalr

and update with:

conda update bioconductor-singlecellsignalr

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-singlecellsignalr:<tag>

(see bioconductor-singlecellsignalr/tags for valid values for <tag>)

Download stats

Link to this page

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