-
recipe
bioconductor-singlecelltk¶ Run common single cell analysis directly through your browser including differential expression, downsampling analysis, and clustering.
- Homepage
https://bioconductor.org/packages/3.9/bioc/html/singleCellTK.html
- License
MIT + file LICENSE
- Recipe
-
package
bioconductor-singlecelltk¶ 
- Versions
1.2.3-0
- Depends bioconductor-annotationdbi
>=1.44.0,<1.45.0
- Depends bioconductor-biobase
>=2.42.0,<2.43.0
- Depends bioconductor-complexheatmap
>=1.20.0,<1.21.0
- Depends bioconductor-delayedarray
>=0.8.0,<0.9.0
- Depends bioconductor-deseq2
>=1.22.0,<1.23.0
- Depends bioconductor-ggtree
>=1.14.0,<1.15.0
- Depends bioconductor-gsva
>=1.30.0,<1.31.0
- Depends bioconductor-gsvadata
>=1.18.0,<1.19.0
- Depends bioconductor-limma
>=3.38.0,<3.39.0
- Depends bioconductor-mast
>=1.8.0,<1.9.0
- Depends bioconductor-multtest
>=2.38.0,<2.39.0
- Depends bioconductor-s4vectors
>=0.20.0,<0.21.0
- Depends bioconductor-singlecellexperiment
>=1.4.0,<1.5.0
- Depends bioconductor-summarizedexperiment
>=1.12.0,<1.13.0
- Depends bioconductor-sva
>=3.30.0,<3.31.0
- Depends r-ape
- Depends r-base
>=3.5.1,<3.5.2.0a0
- Depends r-circlize
- Depends r-cluster
- Depends r-colourpicker
- Depends r-data.table
- Depends r-dt
- Depends r-enrichr
- Depends r-ggplot2
- Depends r-gridextra
- Depends r-matrixstats
- Depends r-plotly
- Depends r-rcolorbrewer
- Depends r-reshape2
- Depends r-rtsne
- Depends r-shiny
- Depends r-shinyalert
- Depends r-shinycssloaders
- Depends r-shinyjs
- Requirements
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-singlecelltk
and update with:
conda update bioconductor-singlecelltk
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-singlecelltk:<tag>
(see bioconductor-singlecelltk/tags for valid values for
<tag>)
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-singlecelltk/README.html)