recipe bioconductor-singlecelltk

Run common single cell analysis directly through your browser including differential expression, downsampling analysis, and clustering.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/singleCellTK.html

License

MIT + file LICENSE

Recipe

/bioconductor-singlecelltk/meta.yaml

package bioconductor-singlecelltk

(downloads) docker_bioconductor-singlecelltk

Versions

1.2.3-0

Depends bioconductor-annotationdbi

>=1.44.0,<1.45.0

Depends bioconductor-biobase

>=2.42.0,<2.43.0

Depends bioconductor-complexheatmap

>=1.20.0,<1.21.0

Depends bioconductor-delayedarray

>=0.8.0,<0.9.0

Depends bioconductor-deseq2

>=1.22.0,<1.23.0

Depends bioconductor-ggtree

>=1.14.0,<1.15.0

Depends bioconductor-gsva

>=1.30.0,<1.31.0

Depends bioconductor-gsvadata

>=1.18.0,<1.19.0

Depends bioconductor-limma

>=3.38.0,<3.39.0

Depends bioconductor-mast

>=1.8.0,<1.9.0

Depends bioconductor-multtest

>=2.38.0,<2.39.0

Depends bioconductor-s4vectors

>=0.20.0,<0.21.0

Depends bioconductor-singlecellexperiment

>=1.4.0,<1.5.0

Depends bioconductor-summarizedexperiment

>=1.12.0,<1.13.0

Depends bioconductor-sva

>=3.30.0,<3.31.0

Depends r-ape

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-circlize

Depends r-cluster

Depends r-colourpicker

Depends r-data.table

Depends r-dt

Depends r-enrichr

Depends r-ggplot2

Depends r-gridextra

Depends r-matrixstats

Depends r-plotly

Depends r-rcolorbrewer

Depends r-reshape2

Depends r-rtsne

Depends r-shiny

Depends r-shinyalert

Depends r-shinycssloaders

Depends r-shinyjs

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-singlecelltk

and update with:

conda update bioconductor-singlecelltk

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-singlecelltk:<tag>

(see bioconductor-singlecelltk/tags for valid values for <tag>)