recipe bioconductor-singlemoleculefootprintingdata

Data supporting the SingleMoleculeFootprinting pkg

Homepage:

https://bioconductor.org/packages/3.18/data/experiment/html/SingleMoleculeFootprintingData.html

License:

GPL-3

Recipe:

/bioconductor-singlemoleculefootprintingdata/meta.yaml

This Data package contains data objcets relevanat for the SingleMoleculeFootprinting package. More specifically, it contains one example of aligned sequencing data (.bam & .bai) necessary to run the SingleMoleculeFootprinting vignette. Additionally, we provide data that are essential for some functions to work correctly such as BaitCapture() and SampleCorrelation().

package bioconductor-singlemoleculefootprintingdata

(downloads) docker_bioconductor-singlemoleculefootprintingdata

versions:

1.10.0-0,  1.8.0-0,  1.6.0-0,  1.2.0-1,  1.2.0-0,  1.0.0-0

depends bioconductor-data-packages:

>=20231203

depends bioconductor-experimenthub:

>=2.10.0,<2.11.0

depends curl:

depends r-base:

>=4.3,<4.4.0a0

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-singlemoleculefootprintingdata

and update with::

   mamba update bioconductor-singlemoleculefootprintingdata

To create a new environment, run:

mamba create --name myenvname bioconductor-singlemoleculefootprintingdata

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-singlemoleculefootprintingdata:<tag>

(see `bioconductor-singlemoleculefootprintingdata/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-singlemoleculefootprintingdata/README.html)