recipe bioconductor-singler

Reference-Based Single-Cell RNA-Seq Annotation

Homepage

https://bioconductor.org/packages/3.11/bioc/html/SingleR.html

License

GPL-3 + file LICENSE

Recipe

/bioconductor-singler/meta.yaml

Performs unbiased cell type recognition from single-cell RNA sequencing data, by leveraging reference transcriptomic datasets of pure cell types to infer the cell of origin of each single cell independently.

package bioconductor-singler

(downloads) docker_bioconductor-singler

Versions

1.2.2-0, 1.2.1-0, 1.0.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-singler

and update with:

conda update bioconductor-singler

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-singler:<tag>

(see bioconductor-singler/tags for valid values for <tag>)