- recipe bioconductor-sizepower
Sample Size and Power Calculation in Micorarray Studies
- Homepage:
https://bioconductor.org/packages/3.20/bioc/html/sizepower.html
- License:
LGPL
- Recipe:
- Links:
biotools: sizepower, doi: 10.1038/nmeth.3252
This package has been prepared to assist users in computing either a sample size or power value for a microarray experimental study. The user is referred to the cited references for technical background on the methodology underpinning these calculations. This package provides support for five types of sample size and power calculations. These five types can be adapted in various ways to encompass many of the standard designs encountered in practice.
- package bioconductor-sizepower¶
- Versions:
1.80.0-0,1.76.0-0,1.72.0-0,1.70.0-0,1.68.0-0,1.64.0-0,1.62.0-0,1.60.0-1,1.60.0-0,1.80.0-0,1.76.0-0,1.72.0-0,1.70.0-0,1.68.0-0,1.64.0-0,1.62.0-0,1.60.0-1,1.60.0-0,1.58.0-0,1.56.0-0,1.54.0-1,1.54.0-0,1.52.0-0,1.50.0-0,1.48.0-0,1.46.0-0- Depends:
on r-base
>=4.5,<4.6.0a0
- Additional platforms:
Installation¶
You need a conda-compatible package manager (currently either pixi, conda, or micromamba) and the Bioconda channel already activated (see Usage). Below, we show how to install with either pixi or conda (for micromamba and mamba, commands are essentially the same as with conda).
Pixi¶
With pixi installed and the Bioconda channel set up (see Usage), to install globally, run:
pixi global install bioconductor-sizepower
to add into an existing workspace instead, run:
pixi add bioconductor-sizepower
In the latter case, make sure to first add bioconda and conda-forge to the channels considered by the workspace:
pixi workspace channel add conda-forge
pixi workspace channel add bioconda
Conda¶
With conda installed and the Bioconda channel set up (see Usage), to install into an existing and activated environment, run:
conda install bioconductor-sizepower
Alternatively, to install into a new environment, run:
conda create -n envname bioconductor-sizepower
with envname being the name of the desired environment.
Container¶
Alternatively, every Bioconda package is available as a container image for usage with your preferred container runtime. For e.g. docker, run:
docker pull quay.io/biocontainers/bioconductor-sizepower:<tag>
(see bioconductor-sizepower/tags for valid values for <tag>).
Integrated deployment¶
Finally, note that many scientific workflow management systems directly integrate both conda and container based software deployment. Thus, workflow steps can be often directly annotated to use the package, leading to automatic deployment by the respective workflow management system, thereby improving reproducibility and transparency. Check the documentation of your workflow management system to find out about the integration.
Download stats¶
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-sizepower/README.html)
