recipe bioconductor-smad

Statistical Modelling of AP-MS Data (SMAD)

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/SMAD.html

License:

MIT + file LICENSE

Recipe:

/bioconductor-smad/meta.yaml

Assigning probability scores to prey proteins captured in affinity purification mass spectrometry (AP-MS) expriments to infer protein-protein interactions. The output would facilitate non-specific background removal as contaminants are commonly found in AP-MS data.

package bioconductor-smad

Versions:

1.14.0-1,  1.14.0-0,  1.10.0-2,  1.10.0-1,  1.10.0-0,  1.8.0-0,  1.6.0-1,  1.6.0-0,  1.4.0-0, 

1.14.0-1,  1.14.0-0,  1.10.0-2,  1.10.0-1,  1.10.0-0,  1.8.0-0,  1.6.0-1,  1.6.0-0,  1.4.0-0,  1.2.0-0,  1.0.1-0

Depends:

• libblas >=3.9.0,<4.0a0

• libgcc-ng >=12

• liblapack >=3.9.0,<4.0a0

• libstdcxx-ng >=12

• r-base >=4.2,<4.3.0a0

• r-dplyr

• r-magrittr >=1.5

• r-rcpp >=1.0.0

• r-rcppalgos

• r-tidyr

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-smad

and update with:

conda update bioconductor-smad

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-smad:<tag>

(see bioconductor-smad/tags for valid values for <tag>)

Download stats

Link to this page

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