recipe bioconductor-snapcgh

Segmentation, normalisation and processing of aCGH data

Homepage

https://bioconductor.org/packages/3.12/bioc/html/snapCGH.html

License

GPL

Recipe

/bioconductor-snapcgh/meta.yaml

Methods for segmenting, normalising and processing aCGH data; including plotting functions for visualising raw and segmented data for individual and multiple arrays.

package bioconductor-snapcgh

Versions

1.60.0-0,  1.58.0-0,  1.56.0-0,  1.54.0-1

Depends

• bioconductor-acgh >=1.68.0,<1.69.0

• bioconductor-dnacopy >=1.64.0,<1.65.0

• bioconductor-glad >=2.54.0,<2.55.0

• bioconductor-limma >=3.46.0,<3.47.0

• bioconductor-tilingarray >=1.68.0,<1.69.0

• libblas >=3.8.0,<4.0a0

• libgcc-ng >=7.5.0

• liblapack >=3.8.0,<4.0a0

• r-base >=4.0,<4.1.0a0

• r-cluster

Required By

• bioconductor-adacgh2

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-snapcgh

and update with:

conda update bioconductor-snapcgh

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-snapcgh:<tag>

(see bioconductor-snapcgh/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-snapcgh/README.html)