recipe bioconductor-snapcgh

Segmentation, normalisation and processing of aCGH data

Homepage:

https://bioconductor.org/packages/3.14/bioc/html/snapCGH.html

License:

GPL

Recipe:

/bioconductor-snapcgh/meta.yaml

Methods for segmenting, normalising and processing aCGH data; including plotting functions for visualising raw and segmented data for individual and multiple arrays.

package bioconductor-snapcgh

Versions:

1.64.0-1,  1.64.0-0,  1.62.0-0,  1.60.0-1,  1.60.0-0,  1.58.0-0,  1.56.0-0,  1.54.0-1

Depends:

• bioconductor-acgh >=1.72.0,<1.73.0

• bioconductor-dnacopy >=1.68.0,<1.69.0

• bioconductor-glad >=2.58.0,<2.59.0

• bioconductor-limma >=3.50.0,<3.51.0

• bioconductor-tilingarray >=1.72.0,<1.73.0

• libblas >=3.8.0,<4.0a0

• libgcc-ng >=10.3.0

• liblapack >=3.8.0,<4.0a0

• r-base >=4.1,<4.2.0a0

• r-cluster

Required By:

• bioconductor-adacgh2

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-snapcgh

and update with:

conda update bioconductor-snapcgh

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-snapcgh:<tag>

(see bioconductor-snapcgh/tags for valid values for <tag>)

Download stats

Link to this page

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