recipe bioconductor-somaticadata

An example cancer whole genome sequencing data for the SomatiCA package

Homepage:

https://bioconductor.org/packages/3.18/data/experiment/html/SomatiCAData.html

License:

Artistic-2.0

Recipe:

/bioconductor-somaticadata/meta.yaml

An example cancer whole genome sequencing data for the SomatiCA package

package bioconductor-somaticadata

versions:

1.40.0-0,  1.38.0-0,  1.35.0-0,  1.32.0-1,  1.32.0-0,  1.30.0-0,  1.28.0-1,  1.28.0-0,  1.27.0-0, 

1.40.0-0,  1.38.0-0,  1.35.0-0,  1.32.0-1,  1.32.0-0,  1.30.0-0,  1.28.0-1,  1.28.0-0,  1.27.0-0,  1.26.0-0,  1.24.0-0,  1.22.0-1,  1.22.0-0,  1.20.0-0

depends bioconductor-data-packages:

>=20231203

depends curl:

depends r-base:

>=4.3,<4.4.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-somaticadata

and update with::

   mamba update bioconductor-somaticadata

To create a new environment, run:

mamba create --name myenvname bioconductor-somaticadata

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-somaticadata:<tag>

(see `bioconductor-somaticadata/tags`_ for valid values for ``<tag>``)

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Link to this page

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