- recipe bioconductor-somaticsignatures
Somatic Signatures
- Homepage
https://bioconductor.org/packages/3.14/bioc/html/SomaticSignatures.html
- License
MIT + file LICENSE
- Recipe
- Links
biotools: somaticsignatures
The SomaticSignatures package identifies mutational signatures of single nucleotide variants (SNVs). It provides a infrastructure related to the methodology described in Nik-Zainal (2012, Cell), with flexibility in the matrix decomposition algorithms.
- package bioconductor-somaticsignatures¶
-
- Versions
2.30.0-0
,2.28.0-0
,2.26.0-1
,2.26.0-0
,2.24.0-0
,2.22.0-0
,2.20.0-1
,2.18.0-0
,2.16.0-0
,2.30.0-0
,2.28.0-0
,2.26.0-1
,2.26.0-0
,2.24.0-0
,2.22.0-0
,2.20.0-1
,2.18.0-0
,2.16.0-0
,2.14.0-0
,2.12.1-0
- Depends
bioconductor-biobase
>=2.54.0,<2.55.0
bioconductor-biostrings
>=2.62.0,<2.63.0
bioconductor-genomeinfodb
>=1.30.0,<1.31.0
bioconductor-genomicranges
>=1.46.0,<1.47.0
bioconductor-ggbio
>=1.42.0,<1.43.0
bioconductor-iranges
>=2.28.0,<2.29.0
bioconductor-pcamethods
>=1.86.0,<1.87.0
bioconductor-s4vectors
>=0.32.0,<0.33.0
bioconductor-variantannotation
>=1.40.0,<1.41.0
r-base
>=4.1,<4.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-somaticsignatures
and update with:
conda update bioconductor-somaticsignatures
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-somaticsignatures:<tag>
(see bioconductor-somaticsignatures/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-somaticsignatures/README.html)