recipe bioconductor-somaticsignatures

Somatic Signatures

Homepage

https://bioconductor.org/packages/3.10/bioc/html/SomaticSignatures.html

License

MIT + file LICENSE

Recipe

/bioconductor-somaticsignatures/meta.yaml

Links

biotools: somaticsignatures

The SomaticSignatures package identifies mutational signatures of single nucleotide variants (SNVs). It provides a infrastructure related to the methodology described in Nik-Zainal (2012, Cell), with flexibility in the matrix decomposition algorithms.

package bioconductor-somaticsignatures

Versions

2.22.0-0, 2.20.0-1, 2.18.0-0, 2.16.0-0, 2.14.0-0, 2.12.1-0

Depends

• bioconductor-biobase >=2.46.0,<2.47.0

• bioconductor-biostrings >=2.54.0,<2.55.0

• bioconductor-genomeinfodb >=1.22.0,<1.23.0

• bioconductor-genomicranges >=1.38.0,<1.39.0

• bioconductor-ggbio >=1.34.0,<1.35.0

• bioconductor-iranges >=2.20.0,<2.21.0

• bioconductor-pcamethods >=1.78.0,<1.79.0

• bioconductor-s4vectors >=0.24.0,<0.25.0

• bioconductor-variantannotation >=1.32.0,<1.33.0

• r-base >=3.6,<3.7.0a0

• r-ggplot2

• r-nmf

• r-proxy

• r-reshape2

Required By

• bioconductor-yapsa

• bioconductor-rariant

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-somaticsignatures

and update with:

conda update bioconductor-somaticsignatures

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-somaticsignatures:<tag>

(see bioconductor-somaticsignatures/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-somaticsignatures/README.html)