recipe bioconductor-somaticsignatures

The SomaticSignatures package identifies mutational signatures of single nucleotide variants (SNVs). It provides a infrastructure related to the methodology described in Nik-Zainal (2012, Cell), with flexibility in the matrix decomposition algorithms.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/SomaticSignatures.html

License

MIT + file LICENSE

Recipe

/bioconductor-somaticsignatures/meta.yaml

Links

biotools: somaticsignatures

package bioconductor-somaticsignatures

Versions

2.18.0-0, 2.16.0-0, 2.14.0-0, 2.12.1-0

Depends

• bioconductor-biobase >=2.42.0,<2.43.0

• bioconductor-biostrings >=2.50.0,<2.51.0

• bioconductor-genomeinfodb >=1.18.0,<1.19.0

• bioconductor-genomicranges >=1.34.0,<1.35.0

• bioconductor-ggbio >=1.30.0,<1.31.0

• bioconductor-iranges >=2.16.0,<2.17.0

• bioconductor-pcamethods >=1.74.0,<1.75.0

• bioconductor-s4vectors >=0.20.0,<0.21.0

• bioconductor-variantannotation >=1.28.0,<1.29.0

• r-base >=3.5.1,<3.5.2.0a0

• r-ggplot2

• r-nmf

• r-proxy

• r-reshape2

Required By

• bioconductor-rariant

• bioconductor-yapsa

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-somaticsignatures

and update with:

conda update bioconductor-somaticsignatures

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-somaticsignatures:<tag>

(see bioconductor-somaticsignatures/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-somaticsignatures/README.html)