recipe bioconductor-sparsematrixstats

Summary Statistics for Rows and Columns of Sparse Matrices

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/sparseMatrixStats.html

License:

MIT + file LICENSE

Recipe:

/bioconductor-sparsematrixstats/meta.yaml

High performance functions for row and column operations on sparse matrices. For example: col / rowMeans2, col / rowMedians, col / rowVars etc. Currently, the optimizations are limited to data in the column sparse format. This package is inspired by the matrixStats package by Henrik Bengtsson.

package bioconductor-sparsematrixstats

Versions:

1.10.0-0,  1.6.0-2,  1.6.0-1,  1.6.0-0,  1.4.0-0,  1.2.1-0,  1.2.0-0,  1.0.0-1,  1.0.0-0

Depends:

• bioconductor-matrixgenerics >=1.10.0,<1.11.0

• libblas >=3.9.0,<4.0a0

• libgcc-ng >=12

• liblapack >=3.9.0,<4.0a0

• libstdcxx-ng >=12

• r-base >=4.2,<4.3.0a0

• r-matrix

• r-matrixstats >=0.60.0

• r-rcpp

Required By:

• bioconductor-gsva

• bioconductor-simbu

• bioconductor-atena

• bioconductor-delayedmatrixstats

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-sparsematrixstats

and update with:

conda update bioconductor-sparsematrixstats

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-sparsematrixstats:<tag>

(see bioconductor-sparsematrixstats/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-sparsematrixstats/README.html)