recipe bioconductor-spatialheatmap

spatialHeatmap

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/spatialHeatmap.html

License:

Artistic-2.0

Recipe:

/bioconductor-spatialheatmap/meta.yaml

The spatialHeatmap package provides functionalities for visualizing cell-, tissue- and organ-specific data of biological assays by coloring the corresponding spatial features defined in anatomical images according to a numeric color key.

package bioconductor-spatialheatmap

Versions:

2.4.0-0,  2.0.0-0,  1.2.0-0,  1.0.0-1,  1.0.0-0

Depends:

• bioconductor-biocfilecache >=2.6.0,<2.7.0

• bioconductor-biocparallel >=1.32.0,<1.33.0

• bioconductor-edger >=3.40.0,<3.41.0

• bioconductor-genefilter >=1.80.0,<1.81.0

• bioconductor-limma >=3.54.0,<3.55.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• bioconductor-scater >=1.26.0,<1.27.0

• bioconductor-scran >=1.26.0,<1.27.0

• bioconductor-scuttle >=1.8.0,<1.9.0

• bioconductor-singlecellexperiment >=1.20.0,<1.21.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• r-base >=4.2,<4.3.0a0

• r-data.table

• r-dplyr

• r-dynamictreecut

• r-flashclust

• r-ggdendro

• r-ggplot2

• r-ggplotify

• r-gplots

• r-gridextra

• r-grimport

• r-htmlwidgets

• r-igraph

• r-matrix

• r-plotly

• r-rappdirs

• r-reshape2

• r-rsvg

• r-shiny

• r-shinydashboard

• r-tibble

• r-upsetr

• r-visnetwork

• r-wgcna

• r-xml2

• r-yaml

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-spatialheatmap

and update with:

conda update bioconductor-spatialheatmap

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-spatialheatmap:<tag>

(see bioconductor-spatialheatmap/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-spatialheatmap/README.html)