- recipe bioconductor-spatiallibd
spatialLIBD: an R/Bioconductor package to visualize spatially-resolved transcriptomics data
- Homepage:
https://bioconductor.org/packages/3.16/data/experiment/html/spatialLIBD.html
- License:
Artistic-2.0
- Recipe:
Inspect interactively the spatially-resolved transcriptomics data from the 10x Genomics Visium platform as well as data from the Maynard, Collado-Torres et al, Nature Neuroscience, 2021 project analyzed by Lieber Institute for Brain Development (LIBD) researchers and collaborators.
- package bioconductor-spatiallibd¶
-
- Versions:
1.10.0-0
,1.6.0-0
,1.4.0-0
,1.2.1-0
,1.2.0-0
,1.0.0-0
- Depends:
bioconductor-annotationhub
>=3.6.0,<3.7.0
bioconductor-biocfilecache
>=2.6.0,<2.7.0
bioconductor-biocgenerics
>=0.44.0,<0.45.0
bioconductor-data-packages
>=20221108
bioconductor-edger
>=3.40.0,<3.41.0
bioconductor-experimenthub
>=2.6.0,<2.7.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-iranges
>=2.32.0,<2.33.0
bioconductor-limma
>=3.54.0,<3.55.0
bioconductor-rtracklayer
>=1.58.0,<1.59.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
bioconductor-scater
>=1.26.0,<1.27.0
bioconductor-scuttle
>=1.8.0,<1.9.0
bioconductor-singlecellexperiment
>=1.20.0,<1.21.0
bioconductor-spatialexperiment
>=1.8.0,<1.9.0
bioconductor-summarizedexperiment
>=1.28.0,<1.29.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-spatiallibd
and update with:
conda update bioconductor-spatiallibd
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-spatiallibd:<tag>
(see bioconductor-spatiallibd/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-spatiallibd/README.html)