recipe bioconductor-spatiallibd

spatialLIBD: an R/Bioconductor package to visualize spatially-resolved transcriptomics data

Homepage:

https://bioconductor.org/packages/3.16/data/experiment/html/spatialLIBD.html

License:

Artistic-2.0

Recipe:

/bioconductor-spatiallibd/meta.yaml

Inspect interactively the spatially-resolved transcriptomics data from the 10x Genomics Visium platform as well as data from the Maynard, Collado-Torres et al, Nature Neuroscience, 2021 project analyzed by Lieber Institute for Brain Development (LIBD) researchers and collaborators.

package bioconductor-spatiallibd

Versions:

1.10.0-0,  1.6.0-0,  1.4.0-0,  1.2.1-0,  1.2.0-0,  1.0.0-0

Depends:

• bioconductor-annotationhub >=3.6.0,<3.7.0

• bioconductor-biocfilecache >=2.6.0,<2.7.0

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• bioconductor-data-packages >=20221108

• bioconductor-edger >=3.40.0,<3.41.0

• bioconductor-experimenthub >=2.6.0,<2.7.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-limma >=3.54.0,<3.55.0

• bioconductor-rtracklayer >=1.58.0,<1.59.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• bioconductor-scater >=1.26.0,<1.27.0

• bioconductor-scuttle >=1.8.0,<1.9.0

• bioconductor-singlecellexperiment >=1.20.0,<1.21.0

• bioconductor-spatialexperiment >=1.8.0,<1.9.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• curl

• r-base >=4.2,<4.3.0a0

• r-benchmarkme

• r-cowplot

• r-dt

• r-fields

• r-ggplot2

• r-golem

• r-jsonlite

• r-magick

• r-matrix

• r-paletteer

• r-plotly

• r-png

• r-rcolorbrewer

• r-sessioninfo

• r-shiny

• r-shinywidgets

• r-statmod

• r-tibble

• r-viridislite

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-spatiallibd

and update with:

conda update bioconductor-spatiallibd

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-spatiallibd:<tag>

(see bioconductor-spatiallibd/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

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