recipe bioconductor-spatzie

Identification of enriched motif pairs from chromatin interaction data

Homepage:

https://bioconductor.org/packages/3.14/bioc/html/spatzie.html

License:

GPL-3

Recipe:

/bioconductor-spatzie/meta.yaml

Identifies motifs that are significantly co-enriched from enhancer-promoter interaction data. While enhancer-promoter annotation is commonly used to define groups of interaction anchors, spatzie also supports co-enrichment analysis between preprocessed interaction anchors. Supports BEDPE interaction data derived from genome-wide assays such as HiC, ChIA-PET, and HiChIP. Can also be used to look for differentially enriched motif pairs between two interaction experiments.

package bioconductor-spatzie

(downloads) docker_bioconductor-spatzie

Versions:

1.0.0-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-spatzie

and update with:

conda update bioconductor-spatzie

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-spatzie:<tag>

(see bioconductor-spatzie/tags for valid values for <tag>)

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