-
recipe
bioconductor-spidermir¶ The aims of SpidermiR are : i) facilitate the network open-access data retrieval from GeneMania data, ii) prepare the data using the appropriate gene nomenclature, iii) integration of miRNA data in a specific network, iv) provide different standard analyses and v) allow the user to visualize the results. In more detail, the package provides multiple methods for query, prepare and download network data (GeneMania), and the integration with validated and predicted miRNA data (mirWalk, miRTarBase, miRandola,Pharmaco-miR,DIANA, Miranda, PicTar and TargetScan) and the use of standard analysis (igraph) and visualization methods (networkD3).
- Homepage
https://bioconductor.org/packages/3.9/bioc/html/SpidermiR.html
- License
GPL (>= 3)
- Recipe
- Links
biotools: spidermir, doi: 10.3390/ijms18020274
-
package
bioconductor-spidermir¶ 
- Versions
1.12.0-0, 1.10.0-0, 1.8.2-0
- Depends bioconductor-annotationdbi
>=1.44.0,<1.45.0
- Depends bioconductor-mirnatap
>=1.16.0,<1.17.0
- Depends bioconductor-mirnatap.db
>=0.99.0,<0.100.0
- Depends bioconductor-org.hs.eg.db
>=3.7.0,<3.8.0
- Depends bioconductor-tcgabiolinks
>=2.10.0,<2.11.0
- Depends r-base
>=3.5.1,<3.5.2.0a0
- Depends r-gdata
- Depends r-ggplot2
- Depends r-gplots
- Depends r-gridextra
- Depends r-httr
- Depends r-igraph
- Depends r-lattice
- Depends r-latticeextra
- Depends r-networkd3
- Depends r-visnetwork
- Requirements
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-spidermir
and update with:
conda update bioconductor-spidermir
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-spidermir:<tag>
(see bioconductor-spidermir/tags for valid values for
<tag>)
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-spidermir/README.html)