recipe bioconductor-spikeli

Affymetrix Spike-in Langmuir Isotherm Data Analysis Tool

Homepage

https://bioconductor.org/packages/3.11/bioc/html/spikeLI.html

License

GPL-2

Recipe

/bioconductor-spikeli/meta.yaml

Links

biotools: spikeli, doi: 10.1038/nmeth.3252

SpikeLI is a package that performs the analysis of the Affymetrix spike-in data using the Langmuir Isotherm. The aim of this package is to show the advantages of a physical-chemistry based analysis of the Affymetrix microarray data compared to the traditional methods. The spike-in (or Latin square) data for the HGU95 and HGU133 chipsets have been downloaded from the Affymetrix web site. The model used in the spikeLI package is described in details in E. Carlon and T. Heim, Physica A 362, 433 (2006).

package bioconductor-spikeli

(downloads) docker_bioconductor-spikeli

Versions

2.48.0-02.46.0-02.44.0-12.44.0-02.42.0-02.40.0-02.38.0-02.36.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-spikeli

and update with:

conda update bioconductor-spikeli

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-spikeli:<tag>

(see bioconductor-spikeli/tags for valid values for <tag>)