recipe bioconductor-splicingfactory

Splicing Diversity Analysis for Transcriptome Data

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/SplicingFactory.html

License:

GPL-3 + file LICENSE

Recipe:

/bioconductor-splicingfactory/meta.yaml

The SplicingFactory R package uses transcript-level expression values to analyze splicing diversity based on various statistical measures, like Shannon entropy or the Gini index. These measures can quantify transcript isoform diversity within samples or between conditions. Additionally, the package analyzes the isoform diversity data, looking for significant changes between conditions.

package bioconductor-splicingfactory

(downloads) docker_bioconductor-splicingfactory

Versions:

1.6.0-01.2.0-01.0.0-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-splicingfactory

and update with:

conda update bioconductor-splicingfactory

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-splicingfactory:<tag>

(see bioconductor-splicingfactory/tags for valid values for <tag>)

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