Package Recipe 'bioconductor-splinter'

recipe bioconductor-splinter¶

SPLINTER provides tools to analyze alternative splicing sites, interpret outcomes based on sequence information, select and design primers for site validiation and give visual representation of the event to guide downstream experiments.

Homepage: https://bioconductor.org/packages/3.9/bioc/html/SPLINTER.html
License: GPL-2
Recipe: /bioconductor-splinter/meta.yaml
Links: biotools: splinter, doi: 10.1038/nmeth.3252

package bioconductor-splinter¶

Versions: 1.8.0-0, 1.6.0-0, 1.4.0-0, 1.2.0-0
Depends bioconductor-biomart: >=2.38.0,<2.39.0
Depends bioconductor-biostrings: >=2.50.0,<2.51.0
Depends bioconductor-bsgenome.mmusculus.ucsc.mm9: >=1.4.0,<1.5.0
Depends bioconductor-genomeinfodb: >=1.18.0,<1.19.0
Depends bioconductor-genomicalignments: >=1.18.0,<1.19.0
Depends bioconductor-genomicfeatures: >=1.34.0,<1.35.0
Depends bioconductor-genomicranges: >=1.34.0,<1.35.0
Depends bioconductor-gviz: >=1.26.0,<1.27.0
Depends bioconductor-iranges: >=2.16.0,<2.17.0
Depends bioconductor-s4vectors: >=0.20.0,<0.21.0
Depends bioconductor-seqlogo: >=1.48.0,<1.49.0
Depends r-base: >=3.5.1,<3.5.2.0a0
Depends r-ggplot2
Depends r-googlevis
Depends r-plyr
Depends r-stringr
Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-splinter

and update with:

conda update bioconductor-splinter

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-splinter:<tag>

(see bioconductor-splinter/tags for valid values for <tag>)

Link to this page¶

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-splinter/README.html)