- recipe bioconductor-splinter
Splice Interpreter of Transcripts
- Homepage:
https://bioconductor.org/packages/3.14/bioc/html/SPLINTER.html
- License:
GPL-2
- Recipe:
- Links:
biotools: splinter, doi: 10.1038/nmeth.3252
Provides tools to analyze alternative splicing sites, interpret outcomes based on sequence information, select and design primers for site validiation and give visual representation of the event to guide downstream experiments.
- package bioconductor-splinter¶
-
- Versions:
1.20.0-0
,1.18.0-0
,1.16.0-1
,1.16.0-0
,1.14.0-0
,1.12.0-0
,1.10.0-1
,1.8.0-0
,1.6.0-0
,1.20.0-0
,1.18.0-0
,1.16.0-1
,1.16.0-0
,1.14.0-0
,1.12.0-0
,1.10.0-1
,1.8.0-0
,1.6.0-0
,1.4.0-0
,1.2.0-0
- Depends:
bioconductor-biomart
>=2.50.0,<2.51.0
bioconductor-biostrings
>=2.62.0,<2.63.0
bioconductor-bsgenome.mmusculus.ucsc.mm9
>=1.4.0,<1.5.0
bioconductor-genomeinfodb
>=1.30.0,<1.31.0
bioconductor-genomicalignments
>=1.30.0,<1.31.0
bioconductor-genomicfeatures
>=1.46.0,<1.47.0
bioconductor-genomicranges
>=1.46.0,<1.47.0
bioconductor-gviz
>=1.38.0,<1.39.0
bioconductor-iranges
>=2.28.0,<2.29.0
bioconductor-s4vectors
>=0.32.0,<0.33.0
bioconductor-seqlogo
>=1.60.0,<1.61.0
r-base
>=4.1,<4.2.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-splinter
and update with:
conda update bioconductor-splinter
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-splinter:<tag>
(see bioconductor-splinter/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-splinter/README.html)