recipe bioconductor-sracipe

Systems biology tool to simulate gene regulatory circuits

Homepage

https://bioconductor.org/packages/3.11/bioc/html/sRACIPE.html

License

MIT + file LICENSE

Recipe

/bioconductor-sracipe/meta.yaml

sRACIPE implements a randomization-based method for gene circuit modeling. It allows us to study the effect of both the gene expression noise and the parametric variation on any gene regulatory circuit (GRC) using only its topology, and simulates an ensemble of models with random kinetic parameters at multiple noise levels. Statistical analysis of the generated gene expressions reveals the basin of attraction and stability of various phenotypic states and their changes associated with intrinsic and extrinsic noises. sRACIPE provides a holistic picture to evaluate the effects of both the stochastic nature of cellular processes and the parametric variation.

package bioconductor-sracipe

(downloads) docker_bioconductor-sracipe

Versions

1.4.0-0, 1.2.0-0, 1.0.0-1

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-sracipe

and update with:

conda update bioconductor-sracipe

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-sracipe:<tag>

(see bioconductor-sracipe/tags for valid values for <tag>)