-
recipe
bioconductor-sspaths
ssPATHS: Single Sample PATHway Score
- Homepage
https://bioconductor.org/packages/3.12/bioc/html/ssPATHS.html
- License
MIT + file LICENSE
- Recipe
This package generates pathway scores from expression data for single samples after training on a reference cohort. The score is generated by taking the expression of a gene set (pathway) from a reference cohort and performing linear discriminant analysis to distinguish samples in the cohort that have the pathway augmented and not. The separating hyperplane is then used to score new samples.
-
package
bioconductor-sspaths
¶ -
- Versions
1.4.0-0
,1.2.0-0
,1.0.0-0
- Depends
bioconductor-summarizedexperiment
>=1.20.0,<1.21.0
r-base
>=4.0,<4.1.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-sspaths
and update with:
conda update bioconductor-sspaths
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-sspaths:<tag>
(see bioconductor-sspaths/tags for valid values for
<tag>
)
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-sspaths/README.html)