recipe bioconductor-sspaths

ssPATHS: Single Sample PATHway Score

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/ssPATHS.html

License:

MIT + file LICENSE

Recipe:

/bioconductor-sspaths/meta.yaml

This package generates pathway scores from expression data for single samples after training on a reference cohort. The score is generated by taking the expression of a gene set (pathway) from a reference cohort and performing linear discriminant analysis to distinguish samples in the cohort that have the pathway augmented and not. The separating hyperplane is then used to score new samples.

package bioconductor-sspaths

Versions:

1.12.0-0,  1.8.0-0,  1.6.0-0,  1.4.0-1,  1.4.0-0,  1.2.0-0,  1.0.0-0

Depends:

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• r-base >=4.2,<4.3.0a0

• r-dml

• r-mess

• r-rocr

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-sspaths

and update with:

conda update bioconductor-sspaths

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-sspaths:<tag>

(see bioconductor-sspaths/tags for valid values for <tag>)

Download stats

Link to this page

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