recipe bioconductor-starbiotrek

This tool StarBioTrek presents some methodologies to measure pathway activity and cross-talk among pathways integrating also the information of network data.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/StarBioTrek.html

License

GPL (>= 3)

Recipe

/bioconductor-starbiotrek/meta.yaml

Links

biotools: starbiotrek, doi: 10.1186/s12918-015-0211-x

package bioconductor-starbiotrek

Versions

1.10.0-1, 1.8.1-1, 1.8.1-0, 1.6.0-0, 1.4.0-0

Depends

• bioconductor-annotationdbi >=1.46.0,<1.47.0

• bioconductor-graphite >=1.30.0,<1.31.0

• bioconductor-spidermir >=1.14.0,<1.15.0

• r-base >=3.6,<3.7.0a0

• r-e1071

• r-ggplot2

• r-igraph

• r-mlmetrics

• r-reshape2

• r-rocr

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-starbiotrek

and update with:

conda update bioconductor-starbiotrek

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-starbiotrek:<tag>

(see bioconductor-starbiotrek/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-starbiotrek/README.html)