recipe bioconductor-starbiotrek

This tool StarBioTrek presents some methodologies to measure pathway activity and cross-talk among pathways integrating also the information of network data.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/StarBioTrek.html

License

GPL (>= 3)

Recipe

/bioconductor-starbiotrek/meta.yaml

Links

biotools: starbiotrek, doi: 10.1186/s12918-015-0211-x

package bioconductor-starbiotrek

(downloads) docker_bioconductor-starbiotrek

Versions

1.8.1-1, 1.8.1-0, 1.6.0-0, 1.4.0-0

Depends bioconductor-annotationdbi

>=1.44.0,<1.45.0

Depends bioconductor-keggrest

>=1.22.0,<1.23.0

Depends bioconductor-org.hs.eg.db

>=3.7.0,<3.8.0

Depends bioconductor-spidermir

>=1.12.0,<1.13.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-e1071

Depends r-igraph

Depends r-rocr

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-starbiotrek

and update with:

conda update bioconductor-starbiotrek

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-starbiotrek:<tag>

(see bioconductor-starbiotrek/tags for valid values for <tag>)