recipe bioconductor-stemhypoxia

Differentiation of Human Embryonic Stem Cells under Hypoxia gene expression dataset by Prado-Lopez et al. (2010)

Homepage:

https://bioconductor.org/packages/3.17/data/experiment/html/stemHypoxia.html

License:

GPL (>=2)

Recipe:

/bioconductor-stemhypoxia/meta.yaml

Expression profiling using microarray technology to prove if 'Hypoxia Promotes Efficient Differentiation of Human Embryonic Stem Cells to Functional Endothelium' by Prado-Lopez et al. (2010) Stem Cells 28:407-418. Full data available at Gene Expression Omnibus series GSE37761.

package bioconductor-stemhypoxia

(downloads) docker_bioconductor-stemhypoxia

versions:
1.36.0-0,  1.33.0-0,  1.30.0-1,  1.30.0-0,  1.28.0-0,  1.26.0-2,  1.26.0-1,  1.26.0-0,  1.25.0-0, 

1.36.0-0,  1.33.0-0,  1.30.0-1,  1.30.0-0,  1.28.0-0,  1.26.0-2,  1.26.0-1,  1.26.0-0,  1.25.0-0,  1.24.0-0,  1.22.0-0,  1.20.0-1,  1.20.0-0,  1.19.0-0,  1.18.0-0,  1.16.0-0,  1.14.0-0

depends bioconductor-data-packages:

>=20230706

depends curl:

depends r-base:

>=4.3,<4.4.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-stemhypoxia

and update with::

   mamba update bioconductor-stemhypoxia

To create a new environment, run:

mamba create --name myenvname bioconductor-stemhypoxia

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-stemhypoxia:<tag>

(see `bioconductor-stemhypoxia/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-stemhypoxia/README.html)