recipe bioconductor-stexampledata

Collection of spatially-resolved transcriptomics datasets in SpatialExperiment Bioconductor format

Homepage:

https://bioconductor.org/packages/3.16/data/experiment/html/STexampleData.html

License:

MIT + file LICENSE

Recipe:

/bioconductor-stexampledata/meta.yaml

Collection of spatially-resolved transcriptomics (SRT) datasets in SpatialExperiment Bioconductor format, for use in examples, demonstrations, and tutorials. The datasets are from several different SRT platforms and have been sourced from various publicly available sources. Several datasets include images and/or ground truth annotation labels.

package bioconductor-stexampledata

Versions:

1.6.0-0,  1.2.0-1,  1.2.0-0,  1.0.0-0

Depends:

• bioconductor-data-packages >=20221108

• bioconductor-experimenthub >=2.6.0,<2.7.0

• bioconductor-spatialexperiment >=1.8.0,<1.9.0

• curl

• r-base >=4.2,<4.3.0a0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-stexampledata

and update with:

conda update bioconductor-stexampledata

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-stexampledata:<tag>

(see bioconductor-stexampledata/tags for valid values for <tag>)

Download stats

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