-
recipe
bioconductor-summarizedexperiment¶ The SummarizedExperiment container contains one or more assays, each represented by a matrix-like object of numeric or other mode. The rows typically represent genomic ranges of interest and the columns represent samples.
- Homepage
https://bioconductor.org/packages/3.9/bioc/html/SummarizedExperiment.html
- License
Artistic-2.0
- Recipe
- Links
biotools: summarizedexperiment, doi: 10.1038/nmeth.3252
-
package
bioconductor-summarizedexperiment¶ 
- Versions
1.12.0-0, 1.10.1-0, 1.8.0-0, 1.6.5-0, 1.4.0-2, 1.4.0-0, 1.2.3-0, 1.0.2-1, 1.0.2-0, 1.0.1-0, 1.0.0-0
- Depends bioconductor-biobase
>=2.42.0,<2.43.0
- Depends bioconductor-biocgenerics
>=0.28.0,<0.29.0
- Depends bioconductor-delayedarray
>=0.8.0,<0.9.0
- Depends bioconductor-genomeinfodb
>=1.18.0,<1.19.0
- Depends bioconductor-genomicranges
>=1.34.0,<1.35.0
- Depends bioconductor-iranges
>=2.16.0,<2.17.0
- Depends bioconductor-s4vectors
>=0.20.0,<0.21.0
- Depends r-base
>=3.5.1,<3.5.2.0a0
- Depends r-matrix
- Requirements
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-summarizedexperiment
and update with:
conda update bioconductor-summarizedexperiment
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-summarizedexperiment:<tag>
(see bioconductor-summarizedexperiment/tags for valid values for
<tag>)
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-summarizedexperiment/README.html)