- recipe bioconductor-summarizedexperiment
SummarizedExperiment container
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/SummarizedExperiment.html
- License:
Artistic-2.0
- Recipe:
- Links:
biotools: summarizedexperiment, doi: 10.1038/nmeth.3252
The SummarizedExperiment container contains one or more assays, each represented by a matrix-like object of numeric or other mode. The rows typically represent genomic ranges of interest and the columns represent samples.
- package bioconductor-summarizedexperiment¶
-
- Versions:
1.28.0-0
,1.24.0-0
,1.22.0-0
,1.20.0-1
,1.20.0-0
,1.18.1-0
,1.16.0-0
,1.14.0-1
,1.12.0-0
,1.28.0-0
,1.24.0-0
,1.22.0-0
,1.20.0-1
,1.20.0-0
,1.18.1-0
,1.16.0-0
,1.14.0-1
,1.12.0-0
,1.10.1-0
,1.8.0-0
,1.6.5-0
,1.4.0-2
,1.4.0-0
,1.2.3-0
,1.0.2-1
,1.0.2-0
,1.0.1-0
,1.0.0-0
- Depends:
bioconductor-biobase
>=2.58.0,<2.59.0
bioconductor-biocgenerics
>=0.44.0,<0.45.0
bioconductor-delayedarray
>=0.24.0,<0.25.0
bioconductor-genomeinfodb
>=1.34.0,<1.35.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-iranges
>=2.32.0,<2.33.0
bioconductor-matrixgenerics
>=1.10.0,<1.11.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-summarizedexperiment
and update with:
conda update bioconductor-summarizedexperiment
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-summarizedexperiment:<tag>
(see bioconductor-summarizedexperiment/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-summarizedexperiment/README.html)