Package Recipe 'bioconductor-summarizedexperiment'

recipe bioconductor-summarizedexperiment

SummarizedExperiment container

Homepage: https://bioconductor.org/packages/3.12/bioc/html/SummarizedExperiment.html
License: Artistic-2.0
Recipe: /bioconductor-summarizedexperiment/meta.yaml
Links: biotools: summarizedexperiment, doi: 10.1038/nmeth.3252

The SummarizedExperiment container contains one or more assays, each represented by a matrix-like object of numeric or other mode. The rows typically represent genomic ranges of interest and the columns represent samples.

package bioconductor-summarizedexperiment¶

Versions

1.20.0-0, 1.18.1-0, 1.16.0-0, 1.14.0-1, 1.12.0-0, 1.10.1-0, 1.8.0-0, 1.6.5-0, 1.4.0-2,

1.20.0-0, 1.18.1-0, 1.16.0-0, 1.14.0-1, 1.12.0-0, 1.10.1-0, 1.8.0-0, 1.6.5-0, 1.4.0-2, 1.4.0-0, 1.2.3-0, 1.0.2-1, 1.0.2-0, 1.0.1-0, 1.0.0-0

Depends

bioconductor-biobase >=2.50.0,<2.51.0
bioconductor-biocgenerics >=0.36.0,<0.37.0
bioconductor-delayedarray >=0.16.0,<0.17.0
bioconductor-genomeinfodb >=1.26.0,<1.27.0
bioconductor-genomicranges >=1.42.0,<1.43.0
bioconductor-iranges >=2.24.0,<2.25.0
bioconductor-matrixgenerics >=1.2.0,<1.3.0
bioconductor-s4vectors >=0.28.0,<0.29.0
r-base >=4.0,<4.1.0a0
r-matrix

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-summarizedexperiment

and update with:

conda update bioconductor-summarizedexperiment

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-summarizedexperiment:<tag>

(see bioconductor-summarizedexperiment/tags for valid values for <tag>)

Link to this page¶

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-summarizedexperiment/README.html)