Package Recipe 'bioconductor-summarizedexperiment'

recipe bioconductor-summarizedexperiment

SummarizedExperiment container

Homepage: https://bioconductor.org/packages/3.13/bioc/html/SummarizedExperiment.html
License: Artistic-2.0
Recipe: /bioconductor-summarizedexperiment/meta.yaml
Links: biotools: summarizedexperiment, doi: 10.1038/nmeth.3252

The SummarizedExperiment container contains one or more assays, each represented by a matrix-like object of numeric or other mode. The rows typically represent genomic ranges of interest and the columns represent samples.

package bioconductor-summarizedexperiment¶

Versions

1.22.0-0, 1.20.0-1, 1.20.0-0, 1.18.1-0, 1.16.0-0, 1.14.0-1, 1.12.0-0, 1.10.1-0, 1.8.0-0,

1.22.0-0, 1.20.0-1, 1.20.0-0, 1.18.1-0, 1.16.0-0, 1.14.0-1, 1.12.0-0, 1.10.1-0, 1.8.0-0, 1.6.5-0, 1.4.0-2, 1.4.0-0, 1.2.3-0, 1.0.2-1, 1.0.2-0, 1.0.1-0, 1.0.0-0

Depends

bioconductor-biobase >=2.52.0,<2.53.0
bioconductor-biocgenerics >=0.38.0,<0.39.0
bioconductor-delayedarray >=0.18.0,<0.19.0
bioconductor-genomeinfodb >=1.28.0,<1.29.0
bioconductor-genomicranges >=1.44.0,<1.45.0
bioconductor-iranges >=2.26.0,<2.27.0
bioconductor-matrixgenerics >=1.4.0,<1.5.0
bioconductor-s4vectors >=0.30.0,<0.31.0
r-base >=4.1,<4.2.0a0
r-matrix

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-summarizedexperiment

and update with:

conda update bioconductor-summarizedexperiment

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-summarizedexperiment:<tag>

(see bioconductor-summarizedexperiment/tags for valid values for <tag>)

Link to this page¶

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-summarizedexperiment/README.html)