recipe bioconductor-summarizedexperiment

The SummarizedExperiment container contains one or more assays, each represented by a matrix-like object of numeric or other mode. The rows typically represent genomic ranges of interest and the columns represent samples.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/SummarizedExperiment.html

License

Artistic-2.0

Recipe

/bioconductor-summarizedexperiment/meta.yaml

Links

biotools: summarizedexperiment, doi: 10.1038/nmeth.3252

package bioconductor-summarizedexperiment

(downloads) docker_bioconductor-summarizedexperiment

Versions

1.12.0-0, 1.10.1-0, 1.8.0-0, 1.6.5-0, 1.4.0-2, 1.4.0-0, 1.2.3-0, 1.0.2-1, 1.0.2-0, 1.0.1-0, 1.0.0-0

Depends bioconductor-biobase

>=2.42.0,<2.43.0

Depends bioconductor-biocgenerics

>=0.28.0,<0.29.0

Depends bioconductor-delayedarray

>=0.8.0,<0.9.0

Depends bioconductor-genomeinfodb

>=1.18.0,<1.19.0

Depends bioconductor-genomicranges

>=1.34.0,<1.35.0

Depends bioconductor-iranges

>=2.16.0,<2.17.0

Depends bioconductor-s4vectors

>=0.20.0,<0.21.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-matrix

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-summarizedexperiment

and update with:

conda update bioconductor-summarizedexperiment

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-summarizedexperiment:<tag>

(see bioconductor-summarizedexperiment/tags for valid values for <tag>)