recipe bioconductor-svanumt

NUMT detection from structural variant calls

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/svaNUMT.html

License:

GPL-3 + file LICENSE

Recipe:

/bioconductor-svanumt/meta.yaml

svaNUMT contains functions for detecting NUMT events from structural variant calls. It takes structural variant calls in GRanges of breakend notation and identifies NUMTs by nuclear-mitochondrial breakend junctions. The main function reports candidate NUMTs if there is a pair of valid insertion sites found on the nuclear genome within a certain distance threshold. The candidate NUMTs are reported by events.

package bioconductor-svanumt

(downloads) docker_bioconductor-svanumt

Versions:

1.4.0-01.0.0-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-svanumt

and update with:

conda update bioconductor-svanumt

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-svanumt:<tag>

(see bioconductor-svanumt/tags for valid values for <tag>)

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