recipe bioconductor-svaretro

Retrotransposed transcript detection from structural variants

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/svaRetro.html

License:

GPL-3 + file LICENSE

Recipe:

/bioconductor-svaretro/meta.yaml

svaRetro contains functions for detecting retrotransposed transcripts (RTs) from structural variant calls. It takes structural variant calls in GRanges of breakend notation and identifies RTs by exon-exon junctions and insertion sites. The candidate RTs are reported by events and annotated with information of the inserted transcripts.

package bioconductor-svaretro

(downloads) docker_bioconductor-svaretro

Versions:

1.4.0-01.0.0-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-svaretro

and update with:

conda update bioconductor-svaretro

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-svaretro:<tag>

(see bioconductor-svaretro/tags for valid values for <tag>)

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