recipe bioconductor-swath2stats

Transform and Filter SWATH Data for Statistical Packages

Homepage

https://bioconductor.org/packages/3.11/bioc/html/SWATH2stats.html

License

GPL-3

Recipe

/bioconductor-swath2stats/meta.yaml

Links

biotools: swath2stats

This package is intended to transform SWATH data from the OpenSWATH software into a format readable by other statistics packages while performing filtering, annotation and FDR estimation.

package bioconductor-swath2stats

Versions

1.18.0-0, 1.16.0-0, 1.14.0-1, 1.12.1-0, 1.10.2-0, 1.8.1-0, 1.6.1-0

Depends

• bioconductor-biomart >=2.44.0,<2.45.0

• r-base >=4.0,<4.1.0a0

• r-data.table

• r-ggplot2

• r-reshape2

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-swath2stats

and update with:

conda update bioconductor-swath2stats

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-swath2stats:<tag>

(see bioconductor-swath2stats/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-swath2stats/README.html)