- recipe bioconductor-synapter
Label-free data analysis pipeline for optimal identification and quantitation
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/synapter.html
- License:
GPL-2
- Recipe:
The synapter package provides functionality to reanalyse label-free proteomics data acquired on a Synapt G2 mass spectrometer. One or several runs, possibly processed with additional ion mobility separation to increase identification accuracy can be combined to other quantitation files to maximise identification and quantitation accuracy.
- package bioconductor-synapter¶
-
- Versions:
2.22.0-0
,2.14.0-1
,2.14.0-0
,2.12.0-0
,2.10.0-0
,2.8.0-1
,2.6.1-0
,2.2.0-0
- Depends:
bioconductor-biobase
>=2.58.0,<2.59.0
bioconductor-biostrings
>=2.66.0,<2.67.0
bioconductor-cleaver
>=1.36.0,<1.37.0
bioconductor-msnbase
>=2.24.0,<2.25.0
bioconductor-multtest
>=2.54.0,<2.55.0
bioconductor-qvalue
>=2.30.0,<2.31.0
r-base
>=4.2,<4.3.0a0
r-readr
>=0.2
r-rmarkdown
>=1.0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-synapter
and update with:
conda update bioconductor-synapter
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-synapter:<tag>
(see bioconductor-synapter/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-synapter/README.html)