recipe bioconductor-synapter

Label-free data analysis pipeline for optimal identification and quantitation

Homepage

https://bioconductor.org/packages/3.12/bioc/html/synapter.html

License

GPL-2

Recipe

/bioconductor-synapter/meta.yaml

Links

biotools: synapter

The synapter package provides functionality to reanalyse label-free proteomics data acquired on a Synapt G2 mass spectrometer. One or several runs, possibly processed with additional ion mobility separation to increase identification accuracy can be combined to other quantitation files to maximise identification and quantitation accuracy.

package bioconductor-synapter

Versions

2.14.0-0,  2.12.0-0,  2.10.0-0,  2.8.0-1,  2.6.1-0,  2.2.0-0

Depends

• bioconductor-biobase >=2.50.0,<2.51.0

• bioconductor-biostrings >=2.58.0,<2.59.0

• bioconductor-cleaver >=1.28.0,<1.29.0

• bioconductor-msnbase >=2.16.0,<2.17.0

• bioconductor-multtest >=2.46.0,<2.47.0

• bioconductor-qvalue >=2.22.0,<2.23.0

• r-base >=4.0,<4.1.0a0

• r-knitr

• r-lattice

• r-rcolorbrewer

• r-readr >=0.2

• r-rmarkdown >=1.0

Required By

• bioconductor-synapterdata

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-synapter

and update with:

conda update bioconductor-synapter

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-synapter:<tag>

(see bioconductor-synapter/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-synapter/README.html)