recipe bioconductor-tabulamurisdata

10x And SmartSeq2 Data From The Tabula Muris Consortium

Homepage:

https://bioconductor.org/packages/3.18/data/experiment/html/TabulaMurisData.html

License:

MIT + file LICENSE

Recipe:

/bioconductor-tabulamurisdata/meta.yaml

Access to processed 10x (droplet) and SmartSeq2 (on FACS-sorted cells) single-cell RNA-seq data from the Tabula Muris consortium (http://tabula-muris.ds.czbiohub.org/).

package bioconductor-tabulamurisdata

(downloads) docker_bioconductor-tabulamurisdata

versions:
1.20.0-0,  1.18.0-0,  1.16.0-0,  1.12.0-1,  1.12.0-0,  1.10.0-0,  1.8.0-1,  1.8.0-0,  1.6.0-0, 

1.20.0-0,  1.18.0-0,  1.16.0-0,  1.12.0-1,  1.12.0-0,  1.10.0-0,  1.8.0-1,  1.8.0-0,  1.6.0-0,  1.3.0-0,  1.2.0-1,  1.0.0-0

depends bioconductor-data-packages:

>=20231203

depends bioconductor-experimenthub:

>=2.10.0,<2.11.0

depends curl:

depends r-base:

>=4.3,<4.4.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-tabulamurisdata

and update with::

   mamba update bioconductor-tabulamurisdata

To create a new environment, run:

mamba create --name myenvname bioconductor-tabulamurisdata

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-tabulamurisdata:<tag>

(see `bioconductor-tabulamurisdata/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-tabulamurisdata/README.html)