recipe bioconductor-tadcompare

TADCompare: Identification and characterization of differential TADs

Homepage

https://bioconductor.org/packages/3.13/bioc/html/TADCompare.html

License

MIT + file LICENSE

Recipe

/bioconductor-tadcompare/meta.yaml

TADCompare is an R package designed to identify and characterize differential Topologically Associated Domains (TADs) between multiple Hi-C contact matrices. It contains functions for finding differential TADs between two datasets, finding differential TADs over time and identifying consensus TADs across multiple matrices. It takes all of the main types of HiC input and returns simple, comprehensive, easy to analyze results.

package bioconductor-tadcompare

(downloads) docker_bioconductor-tadcompare

Versions

1.2.0-01.0.0-11.0.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-tadcompare

and update with:

conda update bioconductor-tadcompare

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-tadcompare:<tag>

(see bioconductor-tadcompare/tags for valid values for <tag>)

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